Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z A a_to_diagonal (oineus.DiagramMatching property) acq_rel (oineus.ReductionParams property) alpha_filtration() (in module oineus) (in module oineus.diff) apparent_opt (oineus.ReductionParams property) apply_move_schedule (oineus.Decomposition attribute) as_str (oineus.ConflictStrategy attribute) (oineus.DenoiseStrategy attribute) (oineus.DiagramPlaneDomain attribute) (oineus.FrechetMeanInit attribute) Avg (oineus.ConflictStrategy attribute) B b_to_diagonal (oineus.DiagramMatching property) birth (oineus.DiagramPoint property) (oineus.IndexDiagramPoint property) birth_index (oineus.DiagramPoint property) BirthBirth (oineus.DenoiseStrategy attribute) bottleneck_distance() (in module oineus) bottleneck_matching() (in module oineus) boundary (oineus.CombinatorialSimplex attribute) (oineus.ProdSimplex attribute) (oineus.Simplex attribute) C cech_delaunay_filtration() (in module oineus.diff) cell_1 (oineus.ProdSimplex property) cell_2 (oineus.ProdSimplex property) chunk_size (oineus.ReductionParams property) clearing_opt (oineus.ReductionParams property) clone (oineus.Decomposition attribute) codomain (oineus.KICRParams property) codomain_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) cohomology_decomposition (oineus.TopologyOptimizerProd property) cohomology_decomposition_ref (oineus.TopologyOptimizerProd attribute) cokernel (oineus.KICRParams property) cokernel_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) col_repr (oineus.ReductionParams property) combinatorial_cell (oineus.ProdSimplex property) (oineus.Simplex property) combinatorial_simplex (oineus.Simplex property) CombinatorialSimplex (class in oineus) combine_loss (oineus.TopologyOptimizerProd attribute) compute_diagram (oineus.TopologyOptimizerProd attribute) compute_diagrams_alpha() (in module oineus) compute_diagrams_ls() (in module oineus) compute_diagrams_vr() (in module oineus) compute_full_u_rows (oineus.Decomposition attribute) compute_ker_cok_reduction_cyl() (in module oineus) compute_kernel_image_cokernel_reduction() (in module oineus) compute_partial_u_rows (oineus.Decomposition attribute) compute_relative_diagrams (in module oineus) compute_u (oineus.ReductionParams property) compute_u_from_v (oineus.Decomposition attribute) compute_u_from_v_1 (oineus.Decomposition attribute) compute_v (oineus.ReductionParams property) ConflictStrategy (class in oineus) copy_back (oineus.ReductionTimings property) copy_pivots (oineus.ReductionTimings property) cost (oineus.DiagramMatching property) crit_sets_apply (oineus.TopologyOptimizerProd attribute) cube_filtration() (in module oineus) (in module oineus.diff) D d_as_csc (oineus.Decomposition attribute) d_data (oineus.Decomposition property) death (oineus.DiagramPoint property) (oineus.IndexDiagramPoint property) death_index (oineus.DiagramPoint property) DeathDeath (oineus.DenoiseStrategy attribute) Decomposition (class in oineus) decomposition_cok (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_f (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_g (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_im (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_ker (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decrease_birth (oineus.TopologyOptimizerProd attribute) decrease_death (oineus.TopologyOptimizerProd attribute) DenoiseStrategy (class in oineus) densify_v_for_selinv (oineus.Decomposition attribute) densify_v_for_selinv_with_targets (oineus.Decomposition attribute) diagram (oineus.Decomposition attribute) diagram_serial (oineus.Decomposition attribute) DiagramMatching (class in oineus) DiagramPlaneDomain (class in oineus) DiagramPoint (class in oineus) Diagrams (class in oineus) DiffFiltration (class in oineus.diff) dim (oineus.CombinatorialSimplex property) (oineus.ProdSimplex property) (oineus.Simplex property) dim_first (oineus.Decomposition property) dim_last (oineus.Decomposition property) dims_to_restore_elz (oineus.ReductionParams property) distance (oineus.DiagramMatching property) do_sanity_check (oineus.ReductionParams property) domain_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) dualize (oineus.Decomposition property) E elapsed (oineus.ReductionParams property) elapsed_copy_back (oineus.ReductionParams property) elapsed_copy_pivots (oineus.ReductionParams property) elapsed_restore_elz (oineus.ReductionParams property) ensure_coh_built (oineus.TopologyOptimizerProd attribute) ensure_coh_reduced (oineus.TopologyOptimizerProd attribute) ensure_has_u_coh (oineus.TopologyOptimizerProd attribute) ensure_has_u_hom (oineus.TopologyOptimizerProd attribute) ensure_hom_built (oineus.TopologyOptimizerProd attribute) ensure_hom_reduced (oineus.TopologyOptimizerProd attribute) essential (oineus.DiagramMatching property) F factor_1 (oineus.ProdSimplex property) factor_2 (oineus.ProdSimplex property) fil_K (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) fil_L (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) Filtration (class in oineus) filtration_index (oineus.Decomposition attribute) finite_to_finite (oineus.DiagramMatching property) FixCritAvg (oineus.ConflictStrategy attribute) frechet_mean() (in module oineus) frechet_mean_multistart() (in module oineus) frechet_mean_objective() (in module oineus) FrechetMeanInit (class in oineus) freudenthal_filtration() (in module oineus) (in module oineus.diff) G get_boundary_matrix (in module oineus) get_denoise_target (in module oineus) get_induced_matching (in module oineus) get_ls_wasserstein_matching_target_values() (in module oineus) get_nth_persistence (in module oineus) (oineus.TopologyOptimizerProd attribute) get_permutation_dtv (in module oineus) H has_matrix_u (oineus.Decomposition attribute) has_matrix_v (oineus.Decomposition attribute) homology_decomposition (oineus.TopologyOptimizerProd property) homology_decomposition_ref (oineus.TopologyOptimizerProd attribute) I id (oineus.CombinatorialSimplex property) (oineus.ProdSimplex property) (oineus.Simplex property) image (oineus.KICRParams property) image_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) in_dimension (oineus.Diagrams attribute) include_zero_persistence (oineus.KICRParams property) increase_birth (oineus.TopologyOptimizerProd attribute) increase_death (oineus.TopologyOptimizerProd attribute) index_diagram_in_dimension (oineus.Diagrams attribute) index_persistence (oineus.DiagramPoint property) IndexDiagramPoint (class in oineus) indices_array (oineus.IndicesValues attribute) IndicesValues (class in oineus) init_frechet_mean_diagonal_grid() (in module oineus) init_frechet_mean_first_diagram() (in module oineus) init_frechet_mean_medoid_diagram() (in module oineus) init_frechet_mean_random_diagram() (in module oineus) is_coh_built (oineus.TopologyOptimizerProd property) is_column_elz (oineus.Decomposition attribute) is_diagonal (oineus.DiagramPoint attribute) is_dynamic (oineus.Decomposition attribute) is_elz (oineus.Decomposition attribute) is_hom_built (oineus.TopologyOptimizerProd property) is_inf (oineus.DiagramPoint attribute) is_reduced (oineus.Decomposition property) is_reduced() (in module oineus) is_reduced_consistent (oineus.Decomposition attribute) J join (oineus.CombinatorialSimplex attribute) (oineus.Simplex attribute) K KerImCokReduced (class in oineus) KerImCokReducedProd (class in oineus) kernel (oineus.KICRParams property) kernel_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) KICRParams (class in oineus) L list_to_filtration() (in module oineus) M make_dynamic (oineus.Decomposition attribute) mapping_cylinder() (in module oineus) mapping_cylinder_filtration() (in module oineus.diff) match (oineus.TopologyOptimizerProd attribute) Max (oineus.ConflictStrategy attribute) max_distance() (in module oineus) Midway (oineus.DenoiseStrategy attribute) min_filtration() (in module oineus) (in module oineus.diff) move (oineus.Decomposition attribute) move_left (oineus.Decomposition attribute) move_right (oineus.Decomposition attribute) multiply_filtration() (in module oineus) N n_elz_violators (oineus.Decomposition attribute) n_elz_violators_in_dim (oineus.Decomposition attribute) n_threads (oineus.KICRParams property) (oineus.ReductionParams property) new_order_to_old (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) O old_order_to_new (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) P pad_to_dim (oineus.Diagrams attribute) params_cok (oineus.KICRParams property) params_f (oineus.KICRParams property) params_g (oineus.KICRParams property) params_im (oineus.KICRParams property) params_ker (oineus.KICRParams property) persistence (oineus.DiagramPoint property) (oineus.IndexDiagramPoint property) persistence_diagram() (in module oineus.diff) PersistenceDiagrams (class in oineus.diff) plot_chain() (in module oineus) plot_diagram() (in module oineus) plot_diagram_gradient() (in module oineus) plot_matching() (in module oineus) point_to_diagonal() (in module oineus) prepare (oineus.ReductionTimings property) print_time (oineus.ReductionParams property) ProdSimplex (class in oineus) progressive_frechet_mean() (in module oineus) progressive_frechet_mean_multistart() (in module oineus) R r_as_csc (oineus.Decomposition attribute) r_data (oineus.Decomposition property) reduce (in module oineus) (oineus.Decomposition attribute) (oineus.ReductionTimings property) reduce_all (oineus.TopologyOptimizerProd attribute) reduction_total (oineus.ReductionTimings property) ReductionParams (class in oineus) ReductionTimings (class in oineus) remove_simplices (oineus.Decomposition attribute) reset (oineus.ReductionTimings attribute) restore_elz (oineus.Decomposition attribute) (oineus.ReductionTimings property) S sanity_check (oineus.Decomposition attribute) (oineus.KICRParams property) Simplex (class in oineus) simplify (oineus.TopologyOptimizerProd attribute) singleton (oineus.TopologyOptimizerProd attribute) singletons (oineus.TopologyOptimizerProd attribute) sliced_wasserstein_distance() (in module oineus) (in module oineus.diff) sliced_wasserstein_distance_diag_corrected() (in module oineus) (in module oineus.diff) sort_dgms (oineus.ReductionParams property) sorted_id (oineus.ProdSimplex property) (oineus.Simplex property) Sum (oineus.ConflictStrategy attribute) T timings (oineus.ReductionParams property) to_scipy_matrix() (in module oineus) TopologyOptimizer (class in oineus) (class in oineus.diff) TopologyOptimizerProd (class in oineus) total (oineus.ReductionTimings property) transpose (oineus.Decomposition attribute) transpose_to (oineus.Decomposition attribute) trim_to_dim (oineus.Diagrams attribute) U u_as_csr (oineus.Decomposition attribute) u_data_t (oineus.Decomposition property) uid (oineus.CombinatorialSimplex property) (oineus.ProdSimplex property) (oineus.Simplex property) update (oineus.TopologyOptimizerProd attribute) update_with_edits (oineus.Decomposition attribute) update_with_permutation (oineus.Decomposition attribute) V v_as_csc (oineus.Decomposition attribute) v_data (oineus.Decomposition property) value (oineus.ProdSimplex property) (oineus.Simplex property) values_array (oineus.IndicesValues attribute) verbose (oineus.KICRParams property) (oineus.ReductionParams property) vertices (oineus.CombinatorialSimplex property) (oineus.Simplex property) vr_filtration() (in module oineus) (in module oineus.diff) VREdge (class in oineus) W wasserstein_cost() (in module oineus.diff) wasserstein_distance() (in module oineus) wasserstein_matching() (in module oineus) weak_alpha_filtration() (in module oineus.diff) write_dgms (oineus.ReductionParams property) X x (oineus.VREdge property) Y y (oineus.VREdge property) Z zero_pers_diagram (oineus.Decomposition attribute)