Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z A a_to_diagonal (oineus.DiagramMatching property) acq_rel (oineus.ReductionParams property) alpha_filtration() (in module oineus) (in module oineus.diff) apply_move_schedule (oineus.Decomposition attribute) as_str (oineus.ConflictStrategy attribute) (oineus.DenoiseStrategy attribute) (oineus.DiagramPlaneDomain attribute) (oineus.FrechetMeanInit attribute) Avg (oineus.ConflictStrategy attribute) B b_to_diagonal (oineus.DiagramMatching property) birth (oineus.DiagramPoint property) (oineus.IndexDiagramPoint property) birth_index (oineus.DiagramPoint property) BirthBirth (oineus.DenoiseStrategy attribute) bottleneck_distance() (in module oineus) bottleneck_matching() (in module oineus) boundary (oineus.CombinatorialSimplex attribute) (oineus.ProdSimplex attribute) (oineus.Simplex attribute) boundary_matrix (oineus.Filtration attribute) (oineus.ProdFiltration attribute) boundary_matrix_in_dimension (oineus.Filtration attribute) (oineus.ProdFiltration attribute) boundary_matrix_rel (oineus.Filtration attribute) C cech_delaunay_filtration() (in module oineus.diff) cell (oineus.Filtration attribute) cell_1 (oineus.ProdSimplex property) cell_2 (oineus.ProdSimplex property) cell_by_uid (oineus.Filtration attribute) cell_value_by_sorted_id (oineus.Filtration attribute) (oineus.ProdFiltration attribute) cells (oineus.Filtration attribute) (oineus.ProdFiltration attribute) chunk_size (oineus.ReductionParams property) clearing_opt (oineus.ReductionParams property) clone (oineus.Decomposition attribute) coboundary_matrix (oineus.Filtration attribute) (oineus.ProdFiltration attribute) codomain (oineus.KICRParams property) codomain_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) cohomology_decomposition (oineus.TopologyOptimizer property) (oineus.TopologyOptimizerProd property) cohomology_decomposition_ref (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) cokernel (oineus.KICRParams property) cokernel_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) col_repr (oineus.ReductionParams property) combinatorial_cell (oineus.ProdSimplex property) (oineus.Simplex property) combinatorial_simplex (oineus.Simplex property) CombinatorialSimplex (class in oineus) combine_loss (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) compute_diagram (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) compute_diagrams_alpha() (in module oineus) compute_diagrams_ls() (in module oineus) compute_diagrams_vr() (in module oineus) compute_full_u_rows (oineus.Decomposition attribute) compute_ker_cok_reduction_cyl() (in module oineus) compute_kernel_image_cokernel_reduction() (in module oineus) compute_partial_u_rows (oineus.Decomposition attribute) compute_relative_diagrams (in module oineus) compute_u (oineus.ReductionParams property) compute_u_from_v (oineus.Decomposition attribute) compute_u_from_v_1 (oineus.Decomposition attribute) compute_v (oineus.ReductionParams property) ConflictStrategy (class in oineus) copy_back (oineus.ReductionTimings property) copy_pivots (oineus.ReductionTimings property) cost (oineus.DiagramMatching property) crit_sets_apply (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) cube_filtration() (in module oineus) (in module oineus.diff) D d_as_csc (oineus.Decomposition attribute) d_data (oineus.Decomposition property) death (oineus.DiagramPoint property) (oineus.IndexDiagramPoint property) death_index (oineus.DiagramPoint property) DeathDeath (oineus.DenoiseStrategy attribute) Decomposition (class in oineus) decomposition_cok (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_f (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_g (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_im (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decomposition_ker (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) decrease_birth (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) decrease_death (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) DenoiseStrategy (class in oineus) densify_v_for_selinv (oineus.Decomposition attribute) densify_v_for_selinv_with_targets (oineus.Decomposition attribute) diagram (oineus.Decomposition attribute) diagram_serial (oineus.Decomposition attribute) DiagramMatching (class in oineus) DiagramPlaneDomain (class in oineus) DiagramPoint (class in oineus) Diagrams (class in oineus) DiffFiltration (class in oineus.diff) dim (oineus.CombinatorialSimplex property) (oineus.ProdSimplex property) (oineus.Simplex property) dim_first (oineus.Decomposition property) (oineus.Filtration property) (oineus.ProdFiltration property) dim_last (oineus.Decomposition property) (oineus.Filtration property) (oineus.ProdFiltration property) dims_to_restore_elz (oineus.ReductionParams property) distance (oineus.DiagramMatching property) do_sanity_check (oineus.ReductionParams property) domain_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) dualize (oineus.Decomposition property) E elapsed (oineus.ReductionParams property) elapsed_copy_back (oineus.ReductionParams property) elapsed_copy_pivots (oineus.ReductionParams property) elapsed_restore_elz (oineus.ReductionParams property) ensure_coh_built (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) ensure_coh_reduced (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) ensure_has_u_coh (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) ensure_has_u_hom (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) ensure_hom_built (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) ensure_hom_reduced (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) essential (oineus.DiagramMatching property) F factor_1 (oineus.ProdSimplex property) factor_2 (oineus.ProdSimplex property) fil_K (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) fil_L (oineus.KerImCokReduced property) (oineus.KerImCokReducedProd property) fil_max (oineus.Filtration attribute) (oineus.ProdFiltration attribute) fil_min (oineus.Filtration attribute) (oineus.ProdFiltration attribute) Filtration (class in oineus) filtration_index (oineus.Decomposition attribute) finite_to_finite (oineus.DiagramMatching property) FixCritAvg (oineus.ConflictStrategy attribute) frechet_mean() (in module oineus) frechet_mean_multistart() (in module oineus) frechet_mean_objective() (in module oineus) FrechetMeanInit (class in oineus) freudenthal_filtration() (in module oineus) (in module oineus.diff) G get_boundary_matrix (in module oineus) get_cell (oineus.ProdFiltration attribute) get_denoise_target (in module oineus) get_edges (oineus.Filtration attribute) get_id_by_sorted_id (oineus.ProdFiltration attribute) get_induced_matching (in module oineus) get_inv_sorting_permutation (oineus.ProdFiltration attribute) get_ls_wasserstein_matching_target_values() (in module oineus) get_nth_persistence (in module oineus) (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) get_permutation_dtv (in module oineus) get_simplices_as_arr (oineus.Filtration attribute) get_sorted_id_by_id (oineus.ProdFiltration attribute) get_sorting_permutation (oineus.ProdFiltration attribute) get_tetrahedra (oineus.Filtration attribute) get_triangles (oineus.Filtration attribute) get_vertices (oineus.Filtration attribute) H has_matrix_u (oineus.Decomposition attribute) has_matrix_v (oineus.Decomposition attribute) homology_decomposition (oineus.TopologyOptimizer property) (oineus.TopologyOptimizerProd property) homology_decomposition_ref (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) I id (oineus.CombinatorialSimplex property) (oineus.ProdSimplex property) (oineus.Simplex property) id_by_sorted_id (oineus.Filtration attribute) image (oineus.KICRParams property) image_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) in_dimension (oineus.Diagrams attribute) include_zero_persistence (oineus.KICRParams property) increase_birth (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) increase_death (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) index_diagram_in_dimension (oineus.Diagrams attribute) index_persistence (oineus.DiagramPoint property) IndexDiagramPoint (class in oineus) indices_array (oineus.IndicesValues attribute) IndicesValues (class in oineus) infinity (oineus.Filtration attribute) (oineus.ProdFiltration attribute) init_frechet_mean_diagonal_grid() (in module oineus) init_frechet_mean_first_diagram() (in module oineus) init_frechet_mean_medoid_diagram() (in module oineus) init_frechet_mean_random_diagram() (in module oineus) inv_sorting_permutation (oineus.Filtration attribute) is_coh_built (oineus.TopologyOptimizer property) (oineus.TopologyOptimizerProd property) is_column_elz (oineus.Decomposition attribute) is_diagonal (oineus.DiagramPoint attribute) is_dynamic (oineus.Decomposition attribute) is_elz (oineus.Decomposition attribute) is_hom_built (oineus.TopologyOptimizer property) (oineus.TopologyOptimizerProd property) is_inf (oineus.DiagramPoint attribute) is_reduced (oineus.Decomposition property) is_reduced() (in module oineus) is_reduced_consistent (oineus.Decomposition attribute) J join (oineus.CombinatorialSimplex attribute) (oineus.Simplex attribute) K KerImCokReduced (class in oineus) KerImCokReducedProd (class in oineus) kernel (oineus.KICRParams property) kernel_diagrams (oineus.KerImCokReduced attribute) (oineus.KerImCokReducedProd attribute) KICRParams (class in oineus) kind (oineus.Filtration property) (oineus.ProdFiltration property) L list_to_filtration() (in module oineus) M make_dynamic (oineus.Decomposition attribute) mapping_cylinder() (in module oineus) mapping_cylinder_filtration() (in module oineus.diff) match (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) Max (oineus.ConflictStrategy attribute) max_dim (oineus.Filtration property) (oineus.ProdFiltration property) max_distance() (in module oineus) Midway (oineus.DenoiseStrategy attribute) min_filtration() (in module oineus) (in module oineus.diff) move (oineus.Decomposition attribute) move_left (oineus.Decomposition attribute) move_right (oineus.Decomposition attribute) multiply_filtration() (in module oineus) N n_elz_violators (oineus.Decomposition attribute) n_elz_violators_in_dim (oineus.Decomposition attribute) n_threads (oineus.KICRParams property) (oineus.ReductionParams property) n_vertices (oineus.Filtration attribute) neg_infinity (oineus.Filtration attribute) (oineus.ProdFiltration attribute) negate (oineus.Filtration property) (oineus.ProdFiltration property) new_order_to_old (oineus.KerImCokReduced attribute) O old_order_to_new (oineus.KerImCokReduced attribute) P pad_to_dim (oineus.Diagrams attribute) params_cok (oineus.KICRParams property) params_f (oineus.KICRParams property) params_g (oineus.KICRParams property) params_im (oineus.KICRParams property) params_ker (oineus.KICRParams property) persistence (oineus.DiagramPoint property) (oineus.IndexDiagramPoint property) persistence_diagram() (in module oineus.diff) PersistenceDiagrams (class in oineus.diff) plot_chain() (in module oineus) plot_diagram() (in module oineus) plot_diagram_gradient() (in module oineus) plot_matching() (in module oineus) point_to_diagonal() (in module oineus) prepare (oineus.ReductionTimings property) print_time (oineus.ReductionParams property) ProdFiltration (class in oineus) ProdSimplex (class in oineus) progressive_frechet_mean() (in module oineus) progressive_frechet_mean_multistart() (in module oineus) R r_as_csc (oineus.Decomposition attribute) r_data (oineus.Decomposition property) reduce (in module oineus) (oineus.Decomposition attribute) (oineus.ReductionTimings property) reduce_all (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) reduction_total (oineus.ReductionTimings property) ReductionParams (class in oineus) ReductionTimings (class in oineus) reset (oineus.ReductionTimings attribute) reset_ids_to_sorted_ids (oineus.Filtration attribute) (oineus.ProdFiltration attribute) restore_elz (oineus.Decomposition attribute) (oineus.ReductionTimings property) S sanity_check (oineus.Decomposition attribute) (oineus.KICRParams property) set_values (oineus.Filtration attribute) (oineus.ProdFiltration attribute) Simplex (class in oineus) simplex (oineus.Filtration attribute) simplex_value_by_sorted_id (oineus.Filtration attribute) simplices (oineus.Filtration attribute) simplify (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) singleton (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) singletons (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) size (oineus.Filtration attribute) (oineus.ProdFiltration attribute) size_in_dimension (oineus.Filtration attribute) (oineus.ProdFiltration attribute) sliced_wasserstein_distance() (in module oineus) (in module oineus.diff) sliced_wasserstein_distance_diag_corrected() (in module oineus) (in module oineus.diff) sort_dgms (oineus.ReductionParams property) sorted_id (oineus.ProdSimplex property) (oineus.Simplex property) sorted_id_by_id (oineus.Filtration attribute) sorted_id_by_uid (oineus.Filtration attribute) sorting_permutation (oineus.Filtration attribute) subfiltration (oineus.Filtration attribute) Sum (oineus.ConflictStrategy attribute) T timings (oineus.ReductionParams property) to_scipy_matrix() (in module oineus) TopologyOptimizer (class in oineus) (class in oineus.diff) TopologyOptimizerProd (class in oineus) total (oineus.ReductionTimings property) transpose (oineus.Decomposition attribute) transpose_to (oineus.Decomposition attribute) trim_to_dim (oineus.Diagrams attribute) U u_as_csr (oineus.Decomposition attribute) u_data_t (oineus.Decomposition property) uid (oineus.CombinatorialSimplex property) (oineus.ProdSimplex property) (oineus.Simplex property) update (oineus.TopologyOptimizer attribute) (oineus.TopologyOptimizerProd attribute) update_with_edits (oineus.Decomposition attribute) update_with_permutation (oineus.Decomposition attribute) V v_as_csc (oineus.Decomposition attribute) v_data (oineus.Decomposition property) value (oineus.ProdSimplex property) (oineus.Simplex property) value_by_uid (oineus.Filtration attribute) values_array (oineus.IndicesValues attribute) verbose (oineus.KICRParams property) (oineus.ReductionParams property) vertices (oineus.CombinatorialSimplex property) (oineus.Simplex property) vr_filtration() (in module oineus) (in module oineus.diff) VREdge (class in oineus) W wasserstein_cost() (in module oineus.diff) wasserstein_distance() (in module oineus) wasserstein_matching() (in module oineus) weak_alpha_filtration() (in module oineus.diff) write_dgms (oineus.ReductionParams property) X x (oineus.VREdge property) Y y (oineus.VREdge property) Z zero_pers_diagram (oineus.Decomposition attribute)